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Publications

Trainee Name: Joshua Wesalo MD, PhD
Trainee: Past
Faculty Member: Alex Deiters, PhD
Publications:

Brown W, Wesalo J, Tsang M, Deiters A. Engineering Small Molecule Switches of Protein Function in Zebrafish Embryos. J Am Chem Soc. 2023 Feb 1;145(4):2395-2403. doi: 10.1021/jacs.2c11366. Epub 2023 Jan 20. PMID: 36662675.

Brown, W., Wesalo, J., Samanta, S., Luo, J., Caldwell, S. E., Tsang, M., & Deiters, A. (2023). Genetically Encoded Aminocoumarin Lysine for Optical Control of Protein–Nucleotide Interactions in Zebrafish Embryos. ACS Chemical Biology.

Joest, E. F.; Winter, C.; Wesalo, J. S.; Deiters, A.; Tampé, R. “Efficient Amber Suppression by Ribosomal Skipping for In Situ Synthesis of Photoconditional Nanobodies.” Angewandte Chemie.

Joest, E. F.; Winter, C.; Wesalo, J. S.; Deiters, A.; Tampé, R. “Light-guided intrabodies for on-demand in situ target recognition in human cells.” Chem. Sci. 2021, 12, 5787–5795.

Zhou, W.; Wesalo, J. S.; Liu, J.; Deiters, A. “Genetic code expansion in mammalian cells: A plasmid system comparison.” Bioorg. Med. Chem. 2020, 28, 115772.

Wesalo, J. S.; Deiters, A. “Fast phosphine-activated control of protein function using unnatural lysine analogues.” Methods Enzymol. 2020, 638, 191–217.

Wesalo, J. S.; Luo, J.; Morihiro, K.; Liu, J.; Deiters, A. “Phosphine-Activated Lysine Analogues for Fast Chemical Control of Protein Subcellular Localization and Protein SUMOylation.” ChemBioChem 2020, 21, 141–148

Trainee: Past
Faculty Member: Matthew Smith, PhD
Publications:

Williamson RC, Cowley BR, Litwin-Kumar A, Doiron B, Kohn A, Smith MA, Yu BM. 2016. Scaling Properties of Dimensionality Reduction for Neural Populations and Network Models. PLoS Comput Biol. PMID: 27926936.

Bittner SR, Williamson RC, Snyder AC, Litwin-Kumar A, Doiron B, Chase SM, Smith MA, Yu BM. 2017. Population activity structure of excitatory and inhibitory neurons. PLoS One. PMID: 28817581.

Cowley B, Williamson R, Clemens K, Smith M, Yu B. (2017) Adaptive Sampling for a Population of Neurons. Neural Information Processing Systems Conference. Accepted.

Williamson RC, Doiron B, Smith MA, Yu BM. Bridging large-scale neuronal recordings and large-scale network models using dimensionality reduction. Curr Opin Neurobiol. 2019 Apr;55:40-47. doi: 10.1016/j.conb.2018.12.009. Epub 2019 Jan 22. PMID: 30677702; PMCID: PMC6548625.

Issar D, Williamson RC, Khanna SB, Smith MA. A neural network for online spike classification that improves decoding accuracy. J Neurophysiol. 2020 Apr 1;123(4):1472-1485. doi: 10.1152/jn.00641.2019. Epub 2020 Feb 26. PMID: 32101491; PMCID: PMC7191521.

Cowley BR, Snyder AC, Acar K, Williamson RC, Yu BM, Smith MA. Slow Drift of Neural Activity as a Signature of Impulsivity in Macaque Visual and Prefrontal Cortex. Neuron. 2020 Nov 11;108(3):551-567.e8. doi: 10.1016/j.neuron.2020.07.021. Epub 2020 Aug 17. PMID: 32810433.

Mortensen, P., Enzor, R., Keppel, K., Williamson, R., Jones, P., Nkrumah, G., Safiullah, Z., Michelson, S., Nadimpalli, S., Shue, A., Waxman, E. The Ophthalmology Mini-Elective Gives Vision to Preclinical Medical Students. MedEdPortal. 2020. https://doi.org/10.15766/mep_2374-8265.11024

Trainee Name: Gary Yu MD, PhD
Trainee: Past
Faculty Member: John J Pacella, PhD
Publications:

u GZ, Istvanic F, Chen X, Nouraie M, Shiva S, Straub AC, Pacella JJ. Ultrasound-Targeted Microbubble Cavitation with Sodium Nitrite Synergistically Enhances Nitric Oxide Production and Microvascular Perfusion. Ultrasound Med Biol. 2020 Mar;46(3):667-678. doi: 10.1016/j.ultrasmedbio.2019.10.012. Epub 2019 Dec 3. PMID: 31810801; PMCID: PMC7010556.

Istvanic F, Yu GZ, Yu FTH, Powers J, Chen X, Pacella JJ. Sonoreperfusion therapy for microvascular obstruction: A step toward clinical translation. Ultrasound Med Biol. 2020 Mar;46(3):712-720. doi: 10.1016/j.ultrasmedbio.2019.11.011. Epub 2020 Jan 7. PMID: 31924423; PMCID: PMC7010545.

Deng Y, Sun AX, Overholt KJ, Yu GZ, Fritch MR, Alexander PG, Shen H, Tuan RS, Lin H. Enhancing chondrogenesis and mechanical strength retention in physiologically relevant hydrogels with incorporation of hyaluronic acid and direct loading of TGF-β. Acta Biomater. 2019 Jan 1;83:167-176. doi: 10.1016/j.actbio.2018.11.022. Epub 2018 Nov 17. PMID: 30458242; PMCID: PMC6733255.