Publications
Abou-Daya KI, Tieu R, Zhao D, Rammal R, Sacirbegovic F, Williams AL, Shlomchik WD, Oberbarnscheidt MH, Lakkis FG. Resident memory T cells form during persistent antigen exposure leading to allograft rejection. Sci Immunol. 2021 Mar 19;6(57):eabc8122. doi: 10.1126/sciimmunol.abc8122. PMID: 33741656; PMCID: PMC8103522.
Hughes AD, Zhao D, Dai H, Abou-Daya KI, Tieu R, Rammal R, Williams AL, Landsittel DP, Shlomchik WD, Morelli AE, Oberbarnscheidt MH, Lakkis FG. Cross-dressed dendritic cells sustain effector T cell responses in islet and kidney allografts. J Clin Invest. 2020 Jan 2;130(1):287-294. doi: 10.1172/JCI125773. PMID: 31763998; PMCID: PMC6934226.
Karim, H. T.*, Wang, M. B.*, Andreescu, C., Tudorascu, D., Butters, M. A., Karp, J. F., ... & Aizenstein, H. J. (2018). Acute trajectories of neural activation predict remission to pharmacotherapy in late-life depression. NeuroImage: Clinical, PubMed PMID: 30013927 (*: equal contribution) PMCID: PMC6024196.
Payabvash S., Palacios E., Owen J., Wang M. B., Tavassoli T., … & Marco, E. (2019). White Matter Connectome Correlates of Auditory Over-Responsivity: Edge Density Imaging and Machine-learning Classifiers. Frontiers in Integrative Neuroscience, PubMed PMID: 30983979
Payabvash, S., Palacios, E. M., Owen, J. P., Wang, M. B., Tavassoli, T., Gerdes, M., ... & Mukherjee, P. (2019). White matter connectome edge density in children with autism spectrum disorders: potential imaging biomarkers using machine-learning models. Brain connectivity, 9(2), 209-220., PMID: 30661372
Palacios E., Owen J., Yuh E., Wang M. B., Vassar M., Ferguson A., … & Mukherjee P. (2020). The Evolution of White Matter Changes After Mild Traumatic Brain Injury. Science Advances, PubMed PMID: 32821816
Hoang SM, Kaminski N, Bhargava R, Barroso-González J, Lynskey ML, García-Expósito L, Roncaioli JL, Wondisford AR, Wallace CT, Watkins SC, James DI, Waddell ID, Ogilvie D, Smith KM, da Veiga Leprevost F, Mellacharevu D, Nesvizhskii AI, Li J, Ray-Gallet D, Sobol RW, Almouzni G, O'Sullivan RJ. Regulation of ALT-associated homology-directed repair by polyADP-ribosylation. Nat Struct Mol Biol. 2020 Dec;27(12):1152-1164. doi: 10.1038/s41594-020-0512-7. Epub 2020 Oct 12. PMID: 33046907.
Prokhorova E, Agnew T, Wondisford AR, Tellier M, Kaminski N, Beijer D, Holder J, Groslambert J, Suskiewicz MJ, Zhu K, Reber JM, Krassnig SC, Palazzo L, Murphy S, Nielsen ML, Mangerich A, Ahel D, Baets J, O'Sullivan RJ, Ahel I. Unrestrained poly-ADP-ribosylation provides insights into chromatin regulation and human disease. Mol Cell. 2021 Jun 17;81(12):2640-2655.e8. doi: 10.1016/j.molcel.2021.04.028. Epub 2021 May 20. PMID: 34019811; PMCID: PMC8221567.
Kaminski N, Wondisford AR, Kwon Y, Lynskey ML, Bhargava R, Barroso-González J, García-Expósito L, He B, Xu M, Mellacheruvu D, Watkins SC, Modesti M, Miller KM, Nesvizhskii AI, Zhang H, Sung P, O'Sullivan RJ. RAD51AP1 regulates ALT-HDR through chromatin-directed homeostasis of TERRA. Mol Cell. 2022 Nov 3;82(21):4001-4017.e7. doi: 10.1016/j.molcel.2022.09.025. Epub 2022 Oct 19. PMID: 36265488; PMCID: PMC9713952.
Mongia M, Yasaka TM, Liu Y, Guler M, Lu L, Bhagwat A, Behsaz B, Wang M, Dorrestein PC, Mohimani H. Fast mass spectrometry search and clustering of untargeted metabolomics data. Nat Biotechnol. 2024 Jan 2. doi: 10.1038/s41587-023-01985-4. Epub ahead of print. PMID: 38168990.
Buck TM, Zeng X, Cantrell PS, Cattley RT, Hasanbasri Z, Yates ME, Nguyen D, Yates NA, Brodsky JL. The Capture of a Disabled Proteasome Identifies Erg25 as a Substrate for Endoplasmic Reticulum Associated Degradation. Mol Cell Proteomics. 2020 Nov;19(11):1896-1909. doi: 10.1074/mcp.RA120.002050. Epub 2020 Aug 31. PubMed PMID: 32868373; PubMed Central PMCID: PMC7664122.
Koppes EA, Redel BK, Johnson MA, Skvorak KJ, Ghaloul-Gonzalez L, Yates ME, Lewis DW, Gollin SM, Wu YL, Christ SE, Yerle M, Leshinski A, Spate LD, Benne JA, Murphy SL, Samuel MS, Walters EM, Hansen SA, Wells KD, Lichter-Konecki U, Wagner RA, Newsome JT, Dobrowolski SF, Vockley J, Prather RS, Nicholls RD. A porcine model of phenylketonuria generated by CRISPR/Cas9 genome editing. JCI Insight. 2020 Oct 15;5(20). doi: 10.1172/jci.insight.141523. PubMed PMID: 33055427; PubMed Central PMCID: PMC7605535.
E. Aranda-Michel et al., "Miniaturized Robotic End-Effector With Piezoelectric Actuation and Fiber Optic Sensing for Minimally Invasive Cardiac Procedures," in IEEE Sensors Journal, vol. 18, no. 12, pp. 4961-4968, 15 June15, 2018, doi: 10.1109/JSEN.2018.2828940.
Aranda-Michel E, Waldman LK, Trumble DR. Left ventricular simulation of cardiac compression: Hemodynamics and regional mechanics. PLoS One. 2019 Oct 31;14(10):e0224475. doi: 10.1371/journal.pone.0224475. PMID: 31671155; PMCID: PMC6822737.
Han J, Kubala M, Aranda-Michel E, Trumble DR. Ventricle-specific epicardial pressures as a means to optimize direct cardiac compression for circulatory support: A pilot study. PLoS One. 2019 Jul 5;14(7):e0219162. doi: 10.1371/journal.pone.0219162. PMID: 31276569; PMCID: PMC6611657.
Aranda-Michel E, Bianco V, Kilic A, Gleason TG, Navid F, Sultan I. Mortality and Readmissions After On-Pump Versus Off-Pump Redo Coronary Artery Bypass Surgery. Cardiovasc Revasc Med. 2020 Jul;21(7):821-825. doi: 10.1016/j.carrev.2019.12.008. Epub 2019 Dec 5. PMID: 31836478.
Bianco, V, Aranda‐Michel, E, Sultan, I, et al. Inconsistent correlation between procedural volume and publicly reported outcomes in adult cardiac operations. J Card Surg. 2019; 34: 1194‐ 1203. https://doi.org/10.1111/jocs.14218
Aranda-Michel E, Yousef S, Sultan I, Kilic A. Septic coronary embolism in a deceptive case of presumed isolated tricuspid valve endocarditis. J Card Surg. 2019 Oct;34(10):1130-1132. doi: 10.1111/jocs.14198. Epub 2019 Aug 2. PMID: 31374581.
Aranda-Michel E, Bianco V, Sultan I, Gleason TG, Navid F, Kilic A. Predictors of increased costs following index adult cardiac operations: Insights from a statewide publicly reported registry. J Card Surg. 2019 Aug;34(8):708-713. doi: 10.1111/jocs.14117. Epub 2019 Jul 3. PMID: 31269297.
Aranda-Michel E, Bianco V, Kilic A, Gleason TG, Sultan I. Endovascular management of spontaneous rupture of the left subclavian artery. J Card Surg. 2019 Jul;34(7):645-646. doi: 10.1111/jocs.14091. Epub 2019 Jun 18. PMID: 31212383.
Aranda-Michel E, Kilic A, Gleason TG, Bianco V, Sultan I. Diagnostic dilemma in prosthetic valve endocarditis: Computed tomography to the rescue. J Card Surg. 2019 Apr;34(4):208-210. doi: 10.1111/jocs.14001. Epub 2019 Feb 25. PMID: 30803027.
Aranda-Michel E, Kilic A, Bianco V, Gleason TG, Sultan I. Aortitis Masquerading as Intramural Hematoma of the Ascending Aorta. Ann Thorac Surg. 2019 May;107(5):e353. doi: 10.1016/j.athoracsur.2018.12.049. Epub 2019 Jan 28. PMID: 30703366.
Han J, Aranda-Michel E, Trumble DR. Muscle-Powered Counterpulsation for Untethered, Non-Blood-Contacting Cardiac Support: A Path to Destination Therapy. IEEE Trans Biomed Eng. 2020 Nov;67(11):3035-3047. doi: 10.1109/TBME.2020.2974826. Epub 2020 Feb 18. PMID: 32086191; PMCID: PMC7587079.
Daniel Shiwarski*, Joshua Tashman*, Alkiviadis Tsamis, Jacqueline Bliley, Malachi Blundon, Edgar Aranda-Michel, Quentin Jallerat, John Szymanski, Brooke McCartney, and Adam Feinberg. Fibronectin-Based Nanomechanical Biosensors to Map 3D Surface Strains in Live Cells and Tissues. Nature Communications. Oct 2020.
Edgar Aranda-Michel, Valentino Bianco, Keith Dufendach, Arman Kilic, Andreas Habertheuer, Rishab Humar, Forozan Navid,Yisi Wang, and Ibrahim Sultan. Mid-term outcomes of subcoronary stentless porcine valve versus stented aortic valve replacement. Journal of Cardiac Surgery. 2020
Seese L, Aranda-Michel E, Sultan I, Morell VO, Mathier MA, Mulukutla SR, Saba S, Dueweke EJ, Levenson JE, Kilic A. Programmatic Responses to the Coronavirus Pandemic: A Survey of 502 Cardiac Surgeons. Ann Thorac Surg. 2020 Sep;110(3):761-763. doi: 10.1016/j.athoracsur.2020.04.014. Epub 2020 Apr 28. PMID: 32360389; PMCID: PMC7187822.
Aranda-Michel E, Bianco V, Kilic A, Gleason TG, Sultan I. Acute type A aortic dissection with complete intimal intussusception into the descending aorta. J Card Surg. 2020 Jul;35(7):1626-1627. doi: 10.1111/jocs.14599. Epub 2020 May 3. PMID: 32362006.
L. Seese, E. Aranda-Michel, L. Huckaby, M. Keebler, G. Hickey, M. Mathier, I. Sultan, T. Gleason, A. Kilic. Development and Validation of a Risk Score to Predict One-Year Mortality after Bridge to Heart Transplantation with Contemporary Durable Left Ventricular Assist Devices. The Journal of Heart and Lung Transplantation. 2020.
Cell Lineage Tracing in Zebrafish Embryos with an Expanded Genetic Code Brown, W.; Liu, J.; Tsang, M.; Deiters, A. ChemBioChem 2018, 19, 1244-1249. Highlighted as a Very Important Paper by ChemBioChem.
Light-Activation of Cre Recombinase in Zebrafish Embryos through Genetic Code Expansion, Brown, W.; Deiters, A. Methods Enzym. 2019, 624, 265-281.
Zhou W, Brown W, Bardhan A, Delaney M, Ilk AS, Rauen RR, Kahn SI, Tsang M, Deiters A. Spatiotemporal Control of CRISPR/Cas9 Function in Cells and Zebrafish using Light-Activated Guide RNA. Angew Chem Int Ed Engl. 2020 Jun 2;59(23):8998-9003. doi: 10.1002/anie.201914575. Epub 2020 Apr 6. PMID: 32160370; PMCID: PMC7250724.
Brown W, Liu J, Deiters A. Genetic Code Expansion in Animals. ACS Chem Biol. 2018;13(9):2375-86. Epub 2018/08/21. doi: 10.1021/acschembio.8b00520. PubMed PMID: 30125487; PMCID: PMC7026698.
Brown W, Zhou W, Deiters A. Regulating CRISPR/Cas9 Function through Conditional Guide RNA Control. Chembiochem. 2021;22(1):63-72. Epub 2020/08/25. doi: 10.1002/cbic.202000423. PubMed PMID: 32833316.
Zhou, W., Brown, W., Bardhan, A., Tsang, M., & Deiters, A. (2021). Optical Control of Base Editing and Transcription through Light‐Activated Guide RNA. ChemPhotoChem, 5(11), 984-988.
Brown, W., Bardhan, A., Darrah, K., Tsang, M., & Deiters, A. (2022). Optical Control of MicroRNA Function in Zebrafish Embryos. Journal of the American Chemical Society, 144(37), 16819-16826.
Brown, W., Albright, S., Tsang, M., & Deiters, A. (2022). Optogenetic Protein Cleavage in Zebrafish Embryos. ChemBioChem, e202200297.
Brown, W., Galpin, J. D., Rosenblum, C., Tsang, M., Ahern, C. A., & Deiters, A. (2023). Chemically Acylated tRNAs are Functional in Zebrafish Embryos. Journal of the American Chemical Society.
Brown, W., Wesalo, J., Tsang, M., & Deiters, A. (2023). Engineering small molecule switches of protein function in zebrafish embryos. Journal of the American Chemical Society, 145(4), 2395-2403.
Brown, W., Rosenblum, C., & Deiters, A. (2023). Small-Molecule Phosphine Activation of Protein Function in Zebrafish Embryos with an Expanded Genetic Code. In Genetically Incorporated Non-Canonical Amino Acids: Methods and Protocols (pp. 247-263). New York, NY: Springer US.
Brown, W., Wesalo, J., Samanta, S., Luo, J., Caldwell, S. E., Tsang, M., & Deiters, A. (2023). Genetically Encoded Aminocoumarin Lysine for Optical Control of Protein–Nucleotide Interactions in Zebrafish Embryos. ACS Chemical Biology.
Ansen H.P. Burr, Junyi Ji, Kadir Ozler, Onur Eskiocak, Brian Yueh, Ashley Menk, Ana Costa, Natalie Rittenhouse, Chris Marshall, Pailin Chiaranunt, Lauren Mullinax, Abigail Overacre-Delgoffe, Vaugh Cooper, Amanda Poholek, Greg Delgoffe, Semir Beyaz, Timothy Hand. “Dietary sugar alters colonocyte pyruvate metabolism and impairs the early proliferative response to damage.” Cell. Mol. Gastroenterol. Hepatol. May 10, 2023, DOI: https://doi.org/10.1016/j.jcmgh.2023.05.001
10.
Chelseá Johnson-Hence, Kathyayini Gopalakrishna, Kara Coffey, Ansen H.P. Burr, Syed Rahman, Yelissa Sosa, Justin Tometich, Jishnu Das, Timothy W. Hand. “Stability and heterogeneity in the anti-microbiota repertoire of human milk-derived Immunoglobulin A.” J Exp Med (2023) 220 (8): e20220839. DOI: https://doi.org/10.1084/jem.20220839
Alfonso Santos-Lopez, Melissa J Fritz, Jeffrey B Lombardo, Ansen H.P. Burr, Victoria A Heinrich, Christopher W Marshall, Vaughn S Cooper, “Evolved resistance to a novel cationic peptide antibiotic requires high mutation supply”, Evolution, Medicine, and Public Health, Volume 10, Issue 1, 2022, Pages 266–276, DOI: https://doi.org/10.1093/emph/eoac022
Overacre-Delgoffe A.E., Cillo A.R., Bumgarner H.J., Burr A.H.P., Tometich J.T., Bhattacharjee A., Bruno T.C., Vignali D.A.A. and T.W. Hand. Microbiome-specific T follicular helper cells drive tertiary lymphoid structures and anti-tumor immunity against colorectal cancer 2021. Immunity. 2021 Dec 14;54(12):2812-2824.e4. doi: 10.1016/j.immuni.2021.11.003.
Van Der Kraak L.A., Schneider C., Dang V., Burr A.H.P., Weiss E.S., Hand T.W. and S.W. Canna Genetic and commensal induction of Interleukin-18 drive intestinal epithelial MHC class II via Interferon-g. Mucosal Immunology. 2021 Jun 8. doi: 10.1038/s41385-021-00419-1
Bhattacharjee A., Burr A.H.P., Overacre-Delgoffe A.E., Tometich J.T., Yang D., Huckestein B.R., Linehan J.L., Spencer S.P., Hall J.A., Harrison O.J., Fonseca D.M., Norton, E.B., Belkaid Y. and T.W. Hand. Environmental Enteric Dysfunction induces intestinal regulatory T cells that inhibit local CD4+ T cell responses and impair the efficacy of oral vaccines. Immunity. 2021 Aug 10;54(8):1745-1757 PMID: 34348118
Gopalakrishna KP, Macadangdang BR, Rogers MB, Tometich JT, Firek BA, Baker R, Ji J, Burr AHP, Ma C, Good M, Morowitz MJ, Hand TW. Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants. Nat Med. 2019 Jul;25(7):1110-1115. doi: 10.1038/s41591-019-0480-9. Epub 2019 Jun 17. PMID: 31209335
Castillo-Dela Cruz P, Wanek AG, Kumar P, An X, Elsegeiny W, Horne W, Fitch A, Burr AHP, Gopalakrishna KP, Chen K, Methé BA, Canna SW, Hand TW, Kolls JK. Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products. Cell Rep. 2019 Nov 19;29(8):2270-2283.e7. doi: 10.1016/j.celrep.2019.10.042. PMID: 31747600; PMCID: PMC6886715.
Burr AHP, Bhattacharjee A, Hand TW. Nutritional Modulation of the Microbiome and Immune Response. J Immunol. 2020 Sep 15;205(6):1479-1487. doi: 10.4049/jimmunol.2000419. PMID: 32900885; PMCID: PMC7490768
Butler A, Chapman GB. Don't Throw Your Heart Away: Increased Transparency of Donor Utilization Practices in Transplant Center Report Cards Alters How Center Performance Is Evaluated. Med Decis Making. 2022 Apr;42(3):341-351. doi: 10.1177/0272989X211038941. Epub 2021 Oct 4. PMID: 34605713.
Godown J, Butler A, Lebovitz DJ, Chapman G. Predictors of Deceased Organ Donation in the Pediatric Population. Pediatrics. 2021 Jun;147(6):e2020009506. doi: 10.1542/peds.2020-009506. Epub 2021 May 7. PMID: 33963074;.
Butler A, Chapman G, Johnson JN, Amodeo A, Böhmer J, Camino M, Davies RR, Dipchand AI, Godown J, Miera O, Pérez-Blanco A, Rosenthal DN, Zangwill S, Kirk R. Behavioral economics-A framework for donor organ decision-making in pediatric heart transplantation. Pediatr Transplant. 2020 May;24(3):e13655. doi: 10.1111/petr.13655. Epub 2020 Jan 27. PMID: 31985140.
Godown J, Schumacher KR, Butler A, Chapman G, Dipchand AI, Kaslow WW, Bearl DW, Kirk R. Patients and their family members prioritize post-transplant survival over waitlist survival when considering donor hearts for transplantation. Pediatr Transplant. 2020;24(2):e13589. Epub 2019/09/29. doi: 10.1111/petr.13589. PubMed PMID: 31562687
Godown J, Schumacher KR, Butler A, Chapman G, Dipchand AI, Kaslow WW, Bearl DW, Kirk R. Patients and their family members prioritize post-transplant survival over waitlist survival when considering donor hearts for transplantation. Pediatr Transplant. 2020 Mar;24(2):e13589. doi: 10.1111/petr.13589. Epub 2019 Sep 27. PMID: 31562687.
Kirk R, Dipchand AI, Davies RR, Miera O, Chapman G, Conway J, Denfield S, Gossett JG, Johnson J, McCulloch M, Schweiger M, Zimpfer D, Ablonczy L, Adachi I, Albert D, Alexander P, Amdani S, Amodeo A, Azeka E, Ballweg J, Beasley G, Böhmer J, Butler A, Camino M, Castro J, Chen S, Chrisant M, Christen U, Danziger-Isakov L, Das B, Everitt M, Feingold B, Fenton M, Garcia-Guereta L, Godown J, Gupta D, Irving C, Joong A, Kemna M, Khulbey SK, Kindel S, Knecht K, Lal AK, Lin K, Lord K, Möller T, Nandi D, Niesse O, Peng DM, Pérez-Blanco A, Punnoose A, Reinhardt Z, Rosenthal D, Scales A, Scheel J, Shih R, Smith J, Smits J, Thul J, Weintraub R, Zangwill S, Zuckerman WA. ISHLT consensus statement on donor organ acceptability and management in pediatric heart transplantation. J Heart Lung Transplant. 2020 Apr;39(4):331-341. doi: 10.1016/j.healun.2020.01.1345. Epub 2020 Jan 31. PMID: 32088108.
Patel A, Abou-Al-Shaar H, Chiang MC, Algattas HN, McDowell MM, Stone JG, Mitchell EB, Emery SP, Greene S. Neuro-Ophthalmologic Manifestations of Congenital Aqueductal Stenosis. Journal of Neurosurgery Pediatrics, Submitted October 2020.
McDowell MM*, Chiang MC*, Abou-Al-Shaar H, Zenonos GA, Wang EW, Snyderman CH, Gardner PA. Applications of endoscopic endonasal surgery in early childhood. Journal of Neurosurgery Pediatrics, Submitted, September 2020.
Chiang MC, Canto-Bustos M, Nguyen EK, Papale AE, Oswald, AMM, Ross SE. Divergent pathways emanating from the lateral parabrachial nucleus mediate separable aspects of the pain response. Neuron. 2020 Apr 8. pii: S0896-6273(20)30221-X. doi: 10.1016/j.neuron.2020.03.014. PMID: 32289251
Chiang MC*, McDowell MM*, Weaver K, Broniscer A, Greene S. Is Schimmelpenning syndrome associated with intracranial tumors? A case report. Pediatric Neurosurgery. 2019 Mar 15; 1-6. doi: 10.1159/000497149. * These two authors contributed equally to this manuscript. PMID: 30879010
McDowell MM*, Chiang MC*, Agarwal N, Ismail N, Friedlander RM, Wecht DA. Exclusive use of fixed pressure valves for cerebrospinal fluid diversion in a modern adult cohort. Heliyon. 2018 Dec 29;4(12):e01099. doi: 10.1016/j.heliyon.2018.e01099. * These two authors contributed equally to this manuscript. PMID: 30627679
Snyder LM, Chiang MC, Loeza-Alcocer E, Omori Y, Hachisuka J, Sheahan T, Adelman PC, Sypek EI, Fulton SA, Friedman RL, Wright MC, Duque MG, Lee YS, Hu Z, Huang H, Cai X, Gale JR, Nagarajan V, Hirai T, Meerschaert KA, Scherrer G, Kaplan DH, Porreca F, Davis BM, Gold MS, Koerber HR, Ross SE. Kappa Opioid Receptor Distribution and Function in Primary Afferents. Neuron. 2018 Sep 19;99(6):1274-1288.e6. doi: 10.1016/j.neuron.2018.08.044. PMID: 30236284
Hachisuka J, Omori Y, Chiang MC, Koerber HR, Ross SE. Wind-up in lamina I spinoparabrachial neurons: a role for reverberatory circuits. Pain. 2018 Mar 23.doi: 10.1097/j.pain.0000000000001229. PMID: 29578943
Hachisuka J, Chiang MC, Ross SE. Itch and Neuropathic Itch. Pain. 2018. Jan 2; doi: 10.1097/j.pain.0000000000001141. PMID: 29389746
Zhao Y, Sivaji S, Chiang MC, Cheng A, Haadi A, Guo Z, Reed A, Kodali R, Borowski J, Frost G, Beukema P, Wills ZP. Amyloid Beta Peptides Block New Synapse Assembly by Nogo Receptor Mediated Inhibition of T-Type Calcium Channels. Neuron. 2017. Oct 11;96(2):355-372.e6. doi: 10.1016/j.neuron.2017.09.041. PMID: 29024660.